NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213864_10080793

Scaffold Ga0213864_10080793


Overview

Basic Information
Taxon OID3300021379 Open in IMG/M
Scaffold IDGa0213864_10080793 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO247
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1593
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009699Metagenome / Metatranscriptome314Y
F016269Metagenome / Metatranscriptome248Y
F025275Metagenome202Y
F032639Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0213864_100807931F009699N/ASAPFWQELHSEDRPTIKIQGRDVPRCLYNLMVTRRDVNLYLHGLKPHRGWKIGDVKAYFGLKGGKQKVADAINAMHSEFMGRFNEQNDEETTD
Ga0213864_100807932F032639N/AMKKQLINEDGFYAGSELKWGMDDVRNVLERFGMATTTSKEDVERILIAAFQDNYRLMETIDEAIGDTIAYMIDEGQLKTDEQ
Ga0213864_100807934F025275N/AMKYYALLHGVCGLAEGYSDTTVRWFNDLDKAMQAKQRTLESLMCRYEEIVSSTDGMQDIVIIDDDNSEHEIVKIIELKPTWPENNSISEYFVWDQMNCEAPFDGDYMPTDMAVIKDLCERQEAVADTFDVEAFHEFVNDLWYGGVAMFDADDLCIYYFQMPKSKFNS
Ga0213864_100807935F016269N/AMNVNDFIFICEEYNIDPVLASEDEGVRKILKTPTSNVN
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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