NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213864_10165322

Scaffold Ga0213864_10165322


Overview

Basic Information
Taxon OID3300021379 Open in IMG/M
Scaffold IDGa0213864_10165322 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO247
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1120
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037742Metagenome / Metatranscriptome167Y
F066802Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0213864_101653221F037742AGGAMSITTITTSQAPDAKPVAINKVVSTNWQVLIEVPQYEVPELVFGGSTTVEPGVGEVISPLILCNTTANTVNIDVRTH
Ga0213864_101653222F066802N/ALQKDTVRFVNAAYDFIDINLTRRDARNLLTAVYNDFAYDKFDPDVPTPTYSDNGSQNAVRTYTASFFNYDGTHVFPVFNPTMQGLKYKGSVAQLSDLASITGQKLNWAYIVATDLTTSFYAGNIYYWDGSTWVLEGANNTDLLDAFVGAWDRMRDYIVNNLSPNSEHSLMVEGLFNDCLKDNILRPETLVFGALVESIAHQFNGASAGVNRNALPLNFRNLGAAISAVASVLNEDGGRIRWSGADELNNQYFARGLRINGRTGRIEGRPFTSSVRKLARRASNSRASL
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