NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213876_10089039

Scaffold Ga0213876_10089039


Overview

Basic Information
Taxon OID3300021384 Open in IMG/M
Scaffold IDGa0213876_10089039 Open in IMG/M
Source Dataset NameRoot-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1635
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil

Source Dataset Sampling Location
Location NameBrazil: Minas Gerais
CoordinatesLat. (o)-19.2822Long. (o)-43.5936Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002324Metagenome571Y
F013826Metagenome / Metatranscriptome268Y

Sequences

Protein IDFamilyRBSSequence
Ga0213876_100890391F013826GAGGMAICWRCPLCGEVSCEYDVNSAGKPLACDNCERALLPQETLCTLCDTPNPWARRDSVHYWCRECGQSQTFYAHAV
Ga0213876_100890392F002324GGAGGMGEIKLFQICYEGDLTVEVSNAMRRLGAEPNFDQSWEVWLPEGRHSAPLVRYLRSHLGEDSRLVVASTHFTTARDFLMIRHSQTPDADYSELHSAIHRLGVVVDLPFESTFVVQSEDRTDVNTLGAALGELCPDDSLMVIGINHDWAYCDAGVSRMHVMGATLADGPQFRTF

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