NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0223845_11872525

Scaffold Ga0223845_11872525


Overview

Basic Information
Taxon OID3300021387 Open in IMG/M
Scaffold IDGa0223845_11872525 Open in IMG/M
Source Dataset NameSheep rumen microbial communities from New Zealand - Tag 1283 SPADES assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2143
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies

Source Dataset Sampling Location
Location NameNew Zealand
CoordinatesLat. (o)-42.26Long. (o)171.6Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052997Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0223845_118725253F052997GGAGGMGYYEEVYLKRLNRYGVDFQSRLQGQREENFHRQLMKSVYYVEFDYEGKTYEGELTPMRQNETKTMQYLLTDVHLDMPNGTILFIPDKDYELRPWLIYYLEDMKASGYNRYIMLKMTHLLSWKDRDGNVQTSWAYFYGQEDNMLKDELKSRSRSKVLYTENLKLSFFILPVNEFLRKDDYLEVGEGRLKEAYVVTGYDIQSTPGVEFVSVDPQYIRDLTPPPEQTEEDSDDDFFWINGGKKQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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