NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224422_10428402

Scaffold Ga0224422_10428402


Overview

Basic Information
Taxon OID3300021400 Open in IMG/M
Scaffold IDGa0224422_10428402 Open in IMG/M
Source Dataset NameSheep rumen microbial communities from New Zealand - Tag 1265 SPADES assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1236
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies

Source Dataset Sampling Location
Location NameNew Zealand
CoordinatesLat. (o)-42.26Long. (o)171.6Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041054Metagenome / Metatranscriptome160Y
F052997Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0224422_104284021F052997N/AYGIDFQSRMQRQREENFKLQLKKSVYYIDFMYEEEKREGELTPYRQNETKDLRYLLTDVHLNIPNGTILMLPDKDGNRVPWMIYWLEDYVASGYNRYIVLRMTHFLEWKNRQGKKCTAWAYFYGQEDNMLKDELKSRSRNKALYTENLKLSFFITPFNENIRKDNYLEVAQGNLVEAYVVTGYDIQSTPGVEFVSVDPQYLRDHSEPPVQTSEDNADDFYWLNRGGEED
Ga0224422_104284022F041054GGGGGLSVRNCAELGVNLQYIIKRLFANQNLLKLLYYTDKDPLDNEDLTKEQIQDEVFEKLIKIVPRVGPHETAHSVVTVRVARGQGLASNGEFRNVVISVESFVPLTQWIIKDTNLRPFAIMGEIQKSLEGKKIEGLGKMVGGDFALNFLTEEISAYEQTFVITTYD
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