Scaffold Ga0224422_12804924

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0224422_12804924

Scaffold Ga0224422_12804924

Overview

Basic Information
Taxon OID	3300021400 Open in IMG/M
Scaffold ID	Ga0224422_12804924 Open in IMG/M
Source Dataset Name	Sheep rumen microbial communities from New Zealand - Tag 1265 SPADES assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1500
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies

Source Dataset Sampling Location
Location Name	New Zealand
Coordinates	Lat. (^o)	-42.26	Long. (^o)	171.6	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F045443	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224422_128049243	F045443	GGA	MKPVQGFSKCGSANEKFIWNEDDSIYGIDIPAWIQIKHEADCNDEDCEEYCKIQFGGAYVKGVNTKVCYSYEILQGICIVVEFNPLTKNYTFYGGCYPGNETYRTVPGIIGEEVEFNNINIEVRELSDPIIQAGEWTDYEYNFGQYWRYVSLVLKILLLIDLGILGYVAYDVYQTREKYKGAPNLIGGEDNKGMPGAFM

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