NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210393_10000003

Scaffold Ga0210393_10000003


Overview

Basic Information
Taxon OID3300021401 Open in IMG/M
Scaffold IDGa0210393_10000003 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)385019
Total Scaffold Genes348 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)287 (82.47%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000549Metagenome / Metatranscriptome1036Y
F001273Metagenome / Metatranscriptome733Y
F027252Metagenome / Metatranscriptome195Y
F095819Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0210393_10000003260F095819GGAGVRLKIYLRELARRARLLAGVCGIVCAGLLVVAAAAPDQPAGDTVGLIEGQDIRVTGPMSVEVVAGQTKTILRSGSDVQVKSGQARISLVEGGQISVCGPAHFSVLKSGGALTVALESGAIHARVDREPALTVYTAEIQAQTMAIGDDPRDVLMGFPSPGMMCIHTYRGALRVEQQLSGRSVIVPQGVDVMLANGQIDEMRNGAGQCKCELQIAKIPAAPAGGSDAAASSSEEAADEKPEAREEPIYTVIMPPLEFDAKAKVQPEPDMRLMTIVRRVRVRPALVFQGRVEEEATATAVATKAPPKPPAASAAAKKTTPAEGSVVDRMRSFFRKLWSRGG
Ga0210393_10000003295F027252GGAGGLTHFFQKTARPLFAVLLAVFMAMGAVLPAPAQEKKASQTDGVDNTKMGAYRAIAQHAYLEFQKGDSAAAAQLARSLERVWDKGEDYGGDTALKKTHPDLFEQIDKAMDDFITPLMEYKTKAPDQARIKAAFNAYMEKLKLAD
Ga0210393_10000003316F001273AGGAGGMRIDLYTKTILTIIALLLAVIVMKPLFQPQPALAEGKYAGVQFSYSGGNHAFFDARTGDVWEYGEDGHFRQHHKVHEFGKDHDH
Ga0210393_10000003317F000549GAGGMRPQLQKKLARANRIDGSIVLYRSAARSQLKALRPLSRGEPWWNMVFRVPLFLRTLLRLVFVCPHWHKGPPVTLRESIPTDLSGCRPVCGRGSYITCLDCGQKFAYNHRTGHLEDFWGVHDAEALAGVRRRLEGFFSPLRGLAARGWRLNLRTPMSQRVRSVHRLGVLTKGQ
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