NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210393_10000041

Scaffold Ga0210393_10000041


Overview

Basic Information
Taxon OID3300021401 Open in IMG/M
Scaffold IDGa0210393_10000041 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)172566
Total Scaffold Genes163 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)135 (82.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009744Metagenome / Metatranscriptome313Y
F010670Metagenome / Metatranscriptome300Y
F011312Metagenome / Metatranscriptome292Y

Sequences

Protein IDFamilyRBSSequence
Ga0210393_10000041104F010670AGGAGGMTKFLITALAAVTLAQPALSVADSQSTDSRAKPSSFVPHPHTTSHVYGSPMQPVARGQARTSHHKQTPKKRLPGAVHRNKP
Ga0210393_1000004111F011312GGAGMNTLSSKLAAFAAALAMNGIVMGALGYLFVLQSAQNTSAIALAKVVVAHQAFS
Ga0210393_1000004188F009744GGAGGMAIQDYVRSIAATETVSKDQVFRFLEMQFARADRDHDGELDADELAAFVHAVARPEMDQR
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