Basic Information | |
---|---|
Taxon OID | 3300021401 Open in IMG/M |
Scaffold ID | Ga0210393_10000094 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 100473 |
Total Scaffold Genes | 97 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 70 (72.16%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Massachusetts | |||||||
Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F021349 | Metagenome / Metatranscriptome | 219 | Y |
F030498 | Metagenome / Metatranscriptome | 185 | Y |
F075734 | Metagenome / Metatranscriptome | 118 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0210393_1000009417 | F030498 | AGGAG | MPNAILKGRNTAAEFWSTRREASLNWLALGLLLAAWNASNNDAAADAQAAVRNRPEALRGYAKVSVRAANRAADLQRQETVTEL |
Ga0210393_100000944 | F075734 | GAGG | MKKNGVGLMVLALWATVAYADDYVSPTEDRVRLSLGVVRYSNQTDLQLDSSTGVPGTPVNAEDQFGLDKADYEAKIQAMVRVGERNRLRFDYFSLDRSGQATVNEPIIFRDVVLQPGDPLNSDLSIRTFGITYGYSFLHSDRYEVAATIGINDTDISARGRVQTQARHVDQTEDQAGPIPTLGLDATYVISKRFYLDGRAQYFRIRIDDLDGSLGIYELDGLYRLRPNVSFAVGYTSLRAHLTSAQVRQGGLFSFDSSGPEIFLRVAF |
Ga0210393_1000009441 | F021349 | AGGA | MKHTELLLLGLVLLPHAVLANQAVSVCVDALEQLETLQTGAPVYKLVGGQQRQYMAKADRPAELARLKTIVADSCSARPKHRQREESEAEQLHLVRSPGCMQDRDRLSMMERKGARTPEDDLARTRKRVQAQCPEVDLADVWLIEWIPIPVPPNG |
⦗Top⦘ |