NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210393_10000246

Scaffold Ga0210393_10000246


Overview

Basic Information
Taxon OID3300021401 Open in IMG/M
Scaffold IDGa0210393_10000246 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)49697
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (71.11%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F084648Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0210393_1000024637F084648N/AVNEVALIANGMYFSLATADQDGCSSISGGTYTIAGQIFSGTGITEMLAACTPPSGLSYYPWTLNVYGTNGALNLTFTAGSGAVPTLGATLDPFYNLYTSSIATLVGNWDDHGNVLSVNPDGTFFEQQGNGCTISGAYTLVDPAHNLYGVSFLFDAATCTNNIAGIQFTGLAYLTPSSPSTWYHLLEDASGVNASGALVVVFDSITPYFTPPTG
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