NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0210393_10001486

Scaffold Ga0210393_10001486


Overview

Basic Information
Taxon OID3300021401 Open in IMG/M
Scaffold IDGa0210393_10001486 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19634
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (80.95%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001772Metagenome / Metatranscriptome637Y
F022277Metagenome / Metatranscriptome215Y
F055897Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0210393_100014864F055897AGGAMRISLSSWLSHLTPVLLSLCFASSFAVSADQSHYVITNDDVPPSLATSVTIYTVATDGQLTLKTKVLTGQGGIGGGYFAANRVNVLDSGNADCVYVSNAQTGEIQGISIKTLKIDGNANGSKKDTGASNGVGLAMNAKYLYASFTDFSTIGTFQVLPGCKLKFVSDITVAGLQGGFVDGMVIHGDMMVVTYGDGSIESFNISTGVPVSNGDEQNSTGSRRGNTYPSGIDITQDGHYAIFGDTSPFTIVEVSDISSGKLTPTVVYRLGNALNSSNVLLSPDETLLYISNNQSGKLTAAFFDKTTGILSKGCVSRALKGFVTDWSYTASLAFEQTTGTGGMVYIAEFGAPSSIGEIEVTSSGGKCTLTESSKSPIADPNSPGLLSIGAFPPRPF
Ga0210393_100014866F001772GAGGMQKRIVFIVGTALLFVAGYLTGNRSATVAHAQAPTQGSVPKSYGRLVTAIADQIGTGLIFEDAQGVVRFVSVTGMKEGELARYDQTPTHGGIPKSYGRLVTAVVNSEGTGLIFEDSDGVIRFVTIAGKKEGELTRN
Ga0210393_100014869F022277GGAVVAIPQAAPAPPKRKHTLLPVLIVLFLISYGLMCMLAVEQDRTIASQRWLIRSLLSDSSELSSIKGKMVQKQYADAQAQAKAGSRSQAQTPLTQAPLTQVPMTQNPMTQDKAGAAAQSSHNAGKTRKTMPPKPPLGISDIVDGRRIVKTI

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.