NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210393_10069798

Scaffold Ga0210393_10069798


Overview

Basic Information
Taxon OID3300021401 Open in IMG/M
Scaffold IDGa0210393_10069798 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2773
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella → Methylocella silvestris → Methylocella silvestris BL2(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035448Metagenome / Metatranscriptome172Y
F069103Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0210393_100697982F069103AGGAMAHKSRVFGDLLDFVSTSRSRPAVTLAALSFAICHFVILGTEPASPGVAADLDAEIPRQLIHFAAELCRFALPLGFMVAGFATRAKTARSTQRRR
Ga0210393_100697983F035448N/ALPLVLRRGTDNLWYVDEAKAWTYFHRFEDNVNFFVKYSDNPFLGALRELKTPNMGYAIYGEHVGTPPLRAYPYSLAAAIKMQEDKIREAPKEAASHAALGDLYLFESNWLSRAIASYEAASALSPDNLAYRWRLMDLYLNASQVEKMLAELKFLSERLPRDQQTQRWYRDYKKEYDFGRD
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