NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210393_10130798

Scaffold Ga0210393_10130798


Overview

Basic Information
Taxon OID3300021401 Open in IMG/M
Scaffold IDGa0210393_10130798 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2011
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007441Metagenome / Metatranscriptome351Y
F013028Metagenome / Metatranscriptome275Y
F033888Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0210393_101307981F013028N/ALLMPGTQEFSMTAPDEAGEYVVVCTVICSEEHEGMFMKFVVTP
Ga0210393_101307982F007441AGGAGMNRIAVFIVMSMLALSFEAYAGEEESKTFHGEISDSQCALNVHSLTQSHQEMLKSKSGDAGSTPASCSQFCIVHMGGKFVLASKGHVYHLDNQDLPRGFVGEKVKVHGILDPKTETIHVEDIEVE
Ga0210393_101307984F033888GGAGGMTEFLRKTRASGVVENVAEYVVMLFVAAMTGVSTLRLLGILP
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