NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210393_10434588

Scaffold Ga0210393_10434588


Overview

Basic Information
Taxon OID3300021401 Open in IMG/M
Scaffold IDGa0210393_10434588 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1071
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015906Metagenome / Metatranscriptome251Y
F054630Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0210393_104345882F054630GGAVNQTDIYRQAIKRTLADLYGVSPDTVDVTWTSDNTIVVQCAGKTFIHLILSDPDDDAPEFLCPDEDPVIVNLTTMNGTSLSVRSDED
Ga0210393_104345883F015906GAGMRTNRVYKQAIKRVFAEKFHDSRMAVYWGRDDDTINVIASQRHYVCRIADVNEDTLEFVSSVGDRVTVALTDEERRQLERRDNAGARHEKMPPRLR

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