NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210385_10326048

Scaffold Ga0210385_10326048


Overview

Basic Information
Taxon OID3300021402 Open in IMG/M
Scaffold IDGa0210385_10326048 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1143
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006757Metagenome / Metatranscriptome365Y
F044385Metagenome154Y
F098478Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0210385_103260481F098478GGAGGMSKAKNGKAVDAKKAAAGDKPESNSNGKSEKAKDVKIQTFTPANTKLVKRGFVKMFVDFVVKRGSVTTEDLAAEFAGRQVEGKKITKQRVLRYAHWCVNKGVLKAK
Ga0210385_103260482F044385GGAGGMLIRNNDGEVAGEMNVSIMQDGTVIRTNTMYQNGRPVTQNISVRDSQGSVRTTNIIGGKILP
Ga0210385_103260483F006757N/AMRNLAVLPPIKDKAQIALLNLTAFQEISTDELITMAHALPGGTKVQIPDRLTAIVLILGTRPVDTD
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