NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210385_10368622

Scaffold Ga0210385_10368622


Overview

Basic Information
Taxon OID3300021402 Open in IMG/M
Scaffold IDGa0210385_10368622 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1075
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F095374Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0210385_103686222F095374GGAGMSKRALHIALFLLIFVATSLFSQDQPKVAPLPFDPLELATGPTVVPDTPEKRAALLNLLERARQNSAMHTPGMAPFTLKVSFNSTGGDSHSQGYGELEETWLNGQTWRWSARLGDYSQLRIFYDGVAYDDKPRGHMPLRLQMVRNSVFWPIGGNFAPSLMRMATAKWEGTDVACILTSGAVNDATATPGRRWEENEFCIDPKTGLLRIHSEAPGIYSVYDYNGGIQFHGRILPRQTTIVEGGTSVLQIRLDDIQDANNDPEQFVPTKKMISHGPGAIMVGPFRFPESVQTPPG
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