NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210389_10000060

Scaffold Ga0210389_10000060


Overview

Basic Information
Taxon OID3300021404 Open in IMG/M
Scaffold IDGa0210389_10000060 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)104114
Total Scaffold Genes89 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)71 (79.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004056Metagenome / Metatranscriptome455Y
F008041Metagenome / Metatranscriptome340Y

Sequences

Protein IDFamilyRBSSequence
Ga0210389_1000006049F008041GGAGGMQDRLFQSEEFGTAAPTTATLIFICPYSASIQQVRFAIRRLLREGYHVVAYQTTSEVFMAADPAILPELISRVREDIKSRIAKLTATGVTEFGFFGSSLGSFILYNCVGQIPELRWGVFNTGGNIARGVWNMSTLRQLHVARGWSLPRLEEAWADLQWPDFGQLDGCRFVFASSRRDSIAPLGNIPEYLGPMLRAGADVQVREVPAVSHRTTVIAGLWKGPQLIRMARAAQPA
Ga0210389_1000006083F004056GAGGVSDLSATMTPREIAAQVVSAIRALNELTCGGGELTGPRDVRDIVASIELVGQGLPQLCEQLARYLVTLNEDGQLRHDSGLDPDTFVTDVIEALAAAGQAADMMTAALTEARTASTDLTPD
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