NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210389_10000064

Scaffold Ga0210389_10000064


Overview

Basic Information
Taxon OID3300021404 Open in IMG/M
Scaffold IDGa0210389_10000064 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)102236
Total Scaffold Genes100 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)73 (73.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000512Metagenome / Metatranscriptome1064Y
F006229Metagenome / Metatranscriptome378Y
F084509Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0210389_1000006467F084509GAGGMPSYGNVLPPVSVGFGDSAAVIASTDVIFPAPFKSAQVALAPAFSSGKVRAAVEIVWSGAAGAFSVQLQTADTDIDAAYIQEGAAITNVNSTNVTRAEFPDVVAKFARILIATLPNNVTATAKISS
Ga0210389_1000006469F006229GGAGMNKQSDVVSLVNISTQKWPPRHRTYFGSLTIQSPEAGTAYAVTPVRACTSLMDLGDKRTMEIRLSAQEIAEDLVREINGDSGEGSYHGVFVAVGPEPTKEELAEARKKLEAFQTRLVETADLEWERSHNMMFITDLERRAARELGLEKPWLYDPKPMADCPACGEKIRPGVAVCRTCGAILDREKAAKFGLAEREEKGGEAPEKKAPKAK
Ga0210389_1000006474F000512N/AMIEVIRERHETPENVARRLCLAGGMNRYGEANYRVVWGWNRLGWIGGKFEDRDARGDLIREVVELRREPKYPQVNRWHVERWVPAEAYGSPRVWYAQTLECASGKSVAALGPYPERGEYEHCFTLQGLRGEFVQLTPTIAEHVARAIEWARGRNPAGQRAKLYEREAREERAYEEWAFEVMDDGAPAFGGVPMVAVG
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