NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210389_10012050

Scaffold Ga0210389_10012050


Overview

Basic Information
Taxon OID3300021404 Open in IMG/M
Scaffold IDGa0210389_10012050 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6659
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001021Metagenome / Metatranscriptome804Y
F002363Metagenome / Metatranscriptome567Y
F010868Metagenome / Metatranscriptome298Y

Sequences

Protein IDFamilyRBSSequence
Ga0210389_100120503F001021AGGAMKRLVITILAVCLSFAAGVAMAERVHDWADLERAHKHVQEAMGEMDRARAANHYDMSGHGAKAEEHLRAAEHELHDAIESARTR
Ga0210389_100120505F002363GGAMNYLGVCLVVQLSLAFGVAGLLWPDRLMPLFDVLMFPWAASHRMVRANSVAAIGLSLVILAKLFAVGF
Ga0210389_100120506F010868AGGMPTQGELKPEPSAAEHVAAASQLLKALQAKIGEHPEIQEAVTRLEMALASLGVQTGGFL
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