NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0210387_10001903

Scaffold Ga0210387_10001903


Overview

Basic Information
Taxon OID3300021405 Open in IMG/M
Scaffold IDGa0210387_10001903 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15847
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (80.95%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002088Metagenome / Metatranscriptome595Y
F013106Metagenome / Metatranscriptome274Y
F013208Metagenome / Metatranscriptome273Y

Sequences

Protein IDFamilyRBSSequence
Ga0210387_1000190313F013106N/AVVLELTEVHAIEGGGLGMLIYLQRWAREHGIGLKLFNPSKSVRERLKMVSSLSDFDIPTLDEMMALLGRADCRYALAP
Ga0210387_1000190315F013208N/AVEVWNDSQHAWGGRERVEALRQEVAAIQEQSAYMQMPRPGFVAMENHARRDPRLQEILAELKSMTDWKKP
Ga0210387_1000190318F002088GGAGGMMHDLQLVIGDICGDPTGLRVKVEDVDIYDYVHFSVVENRKEGDDEMESGEMSHVAFVRRFTKLGNTFAHRRPSA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.