NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210387_10132738

Scaffold Ga0210387_10132738


Overview

Basic Information
Taxon OID3300021405 Open in IMG/M
Scaffold IDGa0210387_10132738 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2115
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001698Metagenome / Metatranscriptome650Y
F014996Metagenome / Metatranscriptome258Y
F057529Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0210387_101327381F057529N/ADALLGVSAAASLDDDRALYRDTEWPAEQVEKFKPYSVASLYSFAQAAFAGASFAGAAFRSPA
Ga0210387_101327383F001698AGGAGMSGVINDIDALAEFRAHLMQFNRDLAENFATMRGHWRELGDVWRDDMYRKFGEALDEVTPGITAYLSATEGHEAHLAALVDRLREYLETGLGTGAGAGTSRTETSRG
Ga0210387_101327384F014996N/AVVWGGSGGTNRVHADIEALKGFHEALVRFRHVQRSVAERSGDEIEMTRASLAAKASHWQARLEQSQAEFDACRAGPGADCSGYARAVEQAAEWLEHIRRWQQRVDEAAGEFRGTAGVFWDLLQNDLPRAESLLLALIADLQAARRVQAGAS
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