NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210387_10453951

Scaffold Ga0210387_10453951


Overview

Basic Information
Taxon OID3300021405 Open in IMG/M
Scaffold IDGa0210387_10453951 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1138
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002237Metagenome / Metatranscriptome579Y
F039272Metagenome / Metatranscriptome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0210387_104539511F002237GAGGMLRKLGLAISYFIAIVFVLSIVLPSIYCLRNGCKGPGELDAFMPAFMLTPLGAIATAFSLHHAIQQIRKRQSWSRAFWPLAIIFTMVLLAVIALIALFVYYTVLHR
Ga0210387_104539512F039272N/AMKSIPLRTQLGLVAAGYAVVLATAAILVFMRYLLYVNHPQDVAAAGGMYAAGDWMLEIFIGCMLLVPTFVLALVIRNSENLYAGYSKVMLGLSLTAPISLGIISIPAVSQGTMLLGWICMDRLLCSPIVIVGLAVSRLLARFDRAKRLTLYALL

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