NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210387_11290712

Scaffold Ga0210387_11290712


Overview

Basic Information
Taxon OID3300021405 Open in IMG/M
Scaffold IDGa0210387_11290712 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)631
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014638Metagenome / Metatranscriptome261Y
F058302Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0210387_112907122F014638AGGMAKLGFDAFEVTVTVPGNVPAEVGAKITVKVALCPAVNVTGGVIPEMLNPVPDAATAEIVTLVPPVFVSVSVWLEVCPTVIFV
Ga0210387_112907123F058302N/AVPAEVGAKVTVNVVLCPGVNVTGGVIPETVNPAPDSPIAEIVALVPPVFVIVSVWLEVCPTVIFV

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