NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210386_10452490

Scaffold Ga0210386_10452490


Overview

Basic Information
Taxon OID3300021406 Open in IMG/M
Scaffold IDGa0210386_10452490 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1109
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001919Metagenome / Metatranscriptome617Y
F006367Metagenome / Metatranscriptome375Y

Sequences

Protein IDFamilyRBSSequence
Ga0210386_104524901F006367N/AVSIELPAASSVANAAFSPDGSFLVLQVSFSDDSDDGELAVQLELVSVGSGRLTAVPDTSVSSDALVGFGWPASSDSLVAELSFTTKVQLAAWRPGERRLSIAVLRSRNPASLVIAPDGP
Ga0210386_104524902F001919GGAMPKRVRPYGSAADAESAGLARGRPGAASELVSELASTMMMRDIAGQAAEATRALRDLMSDGSGFGSLEDVRDVIASLERVGQDLPHLCEQLARILVVQREEGQIAPGSGQDPDFWVVEVVEALAAAGQAADMMTAAL
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