NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210386_11273153

Scaffold Ga0210386_11273153


Overview

Basic Information
Taxon OID3300021406 Open in IMG/M
Scaffold IDGa0210386_11273153 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)620
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009379Metagenome / Metatranscriptome318Y
F025424Metagenome / Metatranscriptome201N

Sequences

Protein IDFamilyRBSSequence
Ga0210386_112731531F025424N/AMRDEIARLAKALEPSFAAPEDAELAATMMVMALRYELGQPDTEVDQLRYRAAMERLPKGSTATPHVVFVSPYDQKTDPHWRVTFTVGPSRYESSRRFGSVAAAET
Ga0210386_112731532F009379N/ATARVWRVKFFNDLRSLTPTRLAYISRSSEAEVAQRAAECMADEEAARVEICRVLLLPPILAEGAEHWLD

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