NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210383_10000001

Scaffold Ga0210383_10000001


Overview

Basic Information
Taxon OID3300021407 Open in IMG/M
Scaffold IDGa0210383_10000001 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)568166
Total Scaffold Genes469 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)373 (79.53%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000207Metagenome / Metatranscriptome1597Y
F003467Metagenome / Metatranscriptome485Y
F012826Metagenome / Metatranscriptome277Y
F020739Metagenome / Metatranscriptome222Y
F038326Metagenome / Metatranscriptome166Y
F059235Metagenome134Y
F084681Metagenome / Metatranscriptome112Y
F103954Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0210383_10000001120F103954AGGTGGMKNAFEPWVGQAVLVWVALGQVKLSLRGTLLKDRCETVLVRPEAGADVEIPKTNVLAIEEAGHRRSLAAFALLTVLPQNVWDLRR
Ga0210383_10000001223F059235AGGAGVEHREMSKTKATFLVSLSGLAAVISAFQLHGWHVYLALALIGIGLTIGFVRWSRKS
Ga0210383_10000001325F012826GGAGMMTVRAHLPAYGSFHVLRSAPVRTGFYVGVILSIVFSGWVIVANRLPFLDRFAMVRNLAAVTLLGIIALIPVVRFWRMPGNLLASSLVAWAIFSLTYRVLCMDFTSLVAAMSLSAVQIFVLGALLYMLVVTVSWIWAIIQRARTSDGSHPNHHPS
Ga0210383_10000001328F000207N/AMKMILASILTTVLIVAMTLGAMFILVQATDYVTSRESPLQRAAAICAELLLGVVLLLGTVWLATHLAVRIFAKKEADAPGGKLA
Ga0210383_10000001355F020739GGAGGMHPGGSMERRLRISGIMVITGLLVEALCLAWSQPIAFVVLVCIGGALIGLGVLFFLYSLLSASSHPASSSGAAAGK
Ga0210383_10000001357F084681AGGAMATSDRRITPRFKLHTPLSFHRMESLSDGEQQAKAINISTRGVYFTTNLVLRVGEAVELLLEMPKRVTGAKVSSRRFTGRVTHVELENMPLGLSGIGVQLLYYERDLVKMER
Ga0210383_1000000162F038326GGAGMTITCEDRDRIFEDGTPAEWAALEAHSVNCVGCAEELRAWKAISAAAKEMRDYSDSPSLWPRIEQALAAETAAKAHRAQRWSWLSLGFGLSLGWQTAAAAALILILTASAGWIYLHPTKPVPSLDLSLLKSPALAEVERTQAAYEQAIDKLATDAKPQLENPATPLQASYREKLLVLDSAINDLRAQAGMNPSNAHLRQQLLAMYQEKQQTLEDILEEKR
Ga0210383_1000000198F003467GGAGMIWARHLKPIAKVGVAALALGALATNGNSQNIYQGKFTLPFETRWGSATLPAGDYTFVMSSASSDYRVYIRGEKVNAIIMAAVADEKAVSGHAQLNLVDIADTQTVQTLDAPELGKTFVYSTPTQKHMGHKEAHQKTLPQTATPSQSSENRTTIAIQAAGR
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