NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210383_10000011

Scaffold Ga0210383_10000011


Overview

Basic Information
Taxon OID3300021407 Open in IMG/M
Scaffold IDGa0210383_10000011 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)232570
Total Scaffold Genes209 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)169 (80.86%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001069Metagenome / Metatranscriptome787Y
F008313Metagenome / Metatranscriptome335Y
F015365Metagenome / Metatranscriptome255Y
F039730Metagenome / Metatranscriptome163Y
F075147Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0210383_10000011106F001069GGAGMQYLPGFTVQCINPMCEARGHWLRADATGPIADDGRCPCCGDFLRNVPPPLSPRFRMRPRALTARPPLRPRPR
Ga0210383_10000011193F039730GGAMRAETLVRAAAHHVKPLVIRGGLAHTFGSLASFLAVLFLLFGLYLLGDAFEHPLAAGAVAVLAAAFSITLAAILFYFLCKPRYGQRPRTTWFRRAE
Ga0210383_10000011194F075147AGAAGGMIMKRGELWHCTNPACRCEVLVQSGSDTEGSNPRCVCGAPMKKKYAPPKFTYLDFLRVEHPVAVCEVSRKG
Ga0210383_1000001135F008313N/AMTAVLILAFSILALIQFAISQWRMIWLTTANQPLSESLRAATGIEPEAIGPNDFGKLLGLCDEMSPRLKMGTPWLREVRGYYSVVAKLEKICRSTQPALSAWASREMKTCSRYVAVLLDQNLSLDLDQRAAVRSF
Ga0210383_1000001197F015365N/AMHTRAFILVAGLLPAFAANSLAQDAAAPPPPQTDADKTALLDLVLANQKKSDEAMNLYERLERVEMRKTSVDAPSGDVKISRVVPAGTGVDHIPIGPDGKPTDPDAYHTELLKLEHALSWAADDGHAQHDAYDKIAKKQKERNELIDATRTAFLYKFVSTETRRGRVLYKYSMEPNPAYKATSRSTAIFAKVRGFVWIDPEAGQLARVEGEVTEDITVGLFLARVNKGSHFMQERYEMLPGLWMPSFSEYDFDGRKLFTTISIHERTFYSQYHRIGPPKEALAVIRAELGKPAGAIADP
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