NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210383_10000035

Scaffold Ga0210383_10000035


Overview

Basic Information
Taxon OID3300021407 Open in IMG/M
Scaffold IDGa0210383_10000035 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)149949
Total Scaffold Genes132 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)102 (77.27%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000043Metagenome / Metatranscriptome3655Y
F026628Metagenome / Metatranscriptome197Y
F030510Metagenome / Metatranscriptome185Y
F048471Metagenome148Y
F094182Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0210383_1000003527F048471N/AMLLFLLAMPVPASVATATGHFEVYCDGVGIFLARIDGTPAPGKLVLFSLKGFPPGTLGGRIYGQGKWSDVYVFRDGCVPDGKCDSIANGKVWIDESDMPDTGDRTPKRISGKYEIDLNGKHLEGAFVAKRHVSKPPLRLCM
Ga0210383_1000003563F094182AGGGGGMNGVCVPERALLSRLAFRIFLCAVLLFGSPTFFTTHLCATSVVALIDRANHKLVIAADCRINRGLRPVSACKIIQEPGCTVAMAGLYEERNSGFHLREYVRVACREPGDLRTKAEAFVRMARRPYEQAVRVMRESQPADFAKTMANKPTEVVFAGIQDGEPGLIVRGLETDATGKIRIERFESTAPSYARIGYFIGLNGHIRAYIKSHPEWGKEDYAKLAPKFVELEIEAHPDLAGLPVSALQIDNKGDVVWLDKGACDARQSD
Ga0210383_1000003570F026628GGAMMAVKDVSKLLADIPRVAWVALSKDEERVIAYAAELQEVLRKAKEAGENDPIVTRVPEVDGATLFL
Ga0210383_1000003579F030510GGAVAAQDNADAGSIRNAIRWGLLLASIATATFRLPRLVNEYRAWRDALGLGDTSASEGWHRVLTVELIGVLVVLAIGISVFYILRPKVKAAE
Ga0210383_1000003580F000043N/AMIYQLGWTTLPGLRGLSVSEFRATPTDAPDNTSGVAIEFASGAECDSFLKQLEEHFVPRRFTNAANAFDSVKAYVLEYAAKR
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