NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210383_10000049

Scaffold Ga0210383_10000049


Overview

Basic Information
Taxon OID3300021407 Open in IMG/M
Scaffold IDGa0210383_10000049 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)133072
Total Scaffold Genes124 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)102 (82.26%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000239Metagenome / Metatranscriptome1488Y
F019865Metagenome / Metatranscriptome227Y
F029230Metagenome / Metatranscriptome189Y
F092653Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0210383_1000004932F092653AGGAGGMKKRILPLISGLLLIAMPLLGQDDGHSKKATNVSGVISQDGLSFVSDKDHRTWKIANPAVLRDMEGHHAKLAYHLTSNAGEIFVTSASIVQEQPTVAHNSGDSAFRR
Ga0210383_1000004938F029230GAGMNTLLKVTLFAFVIGLAILCCWAPWTTTPAGSDAAHNSLGYAAIWSHQFAAVPGARVDMGAFAMLAAVVAFFAIVIGASAYFFRNKRGAEREDV
Ga0210383_1000004941F019865GGAGGMAVIWLLALILGSAFAIAVGNGAKWKVLNAVIILACMGVGLGLGYSLSLGRGNFGSVHGEGLQFAMMFGIVGAMACVARNTWSSKE
Ga0210383_1000004977F000239GGAGGMDESRLHAIQFLEKEIKTYAALSLFLSKRGIKVDLLLGAKKTLISPSFYKERMKEAKKLVHELRSKK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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