NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210383_10000063

Scaffold Ga0210383_10000063


Overview

Basic Information
Taxon OID3300021407 Open in IMG/M
Scaffold IDGa0210383_10000063 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)121775
Total Scaffold Genes101 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)77 (76.24%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006964Metagenome / Metatranscriptome361Y
F037374Metagenome / Metatranscriptome168Y
F040215Metagenome / Metatranscriptome162Y
F087465Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0210383_10000063101F037374N/AQGAEAVSLVRLDGEVSDSILSAIRGIPAITVARLLKLG
Ga0210383_100000632F087465AGGAVSRGGKEIFSVPVNGSARRVTFTFLRNNRIALTNDASLESSLSAPHGESDAQAWRERFRRLAGSPVFAVVRQDAGAGAALSARAPGGLQSPQLSALIDQLQWITVAGKPESDRLRVVLEGEGTSDAPTRQLSDVLNGLLVLALAGLHDQKLRQQLQPDVREAYLEMLKSADVSQIDRGETKSVRLIFDVTPQFLEAARASIPAASPPPQNKVLPNKSTIRN
Ga0210383_1000006343F006964GGAGMLSGPKGCEEPSSTQCCVCGHRAELFDLPGRTGKYCLECSADVATSILLTTEIDAATLAGQDASALVAEFSQLSTSLLERAQSA
Ga0210383_1000006365F040215GAGMNRGFYIILIPAALVAIGYVVVFRYIGVTPAYWRLILPVLLFAGAMWWLSRRTGRKTGRKTGSGAP
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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