NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210383_10000117

Scaffold Ga0210383_10000117


Overview

Basic Information
Taxon OID3300021407 Open in IMG/M
Scaffold IDGa0210383_10000117 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)83334
Total Scaffold Genes68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)57 (83.82%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019702Metagenome / Metatranscriptome228Y
F076446Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0210383_1000011759F019702GGGGGMKKMTAIFLSSTMLLGFETAHAKDKHATIPSKVLSARTIYVDNQTNDAELQNDALVGLNKWGRFDIVDSPQKADIVLRLFGSSVVKYVPASDPAATYNVKPVSANTAAGEELAPPGCTRITVIEPKSGTALWSEVRRTSNPQEKSKLVEGLHDAVDQQEKNHNK
Ga0210383_100001177F076446GAGGMRKHAQHNAEPHPTLVVPFGAKGGGLLTGHPIGLVIVLGLLLMGLVGLPEARLFFVGSLCLGGIFGLVLWLRHR
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