NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210383_10000197

Scaffold Ga0210383_10000197


Overview

Basic Information
Taxon OID3300021407 Open in IMG/M
Scaffold IDGa0210383_10000197 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)60035
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (78.18%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005865Metagenome388Y
F005890Metagenome / Metatranscriptome387Y
F006676Metagenome / Metatranscriptome367Y
F015496Metagenome / Metatranscriptome254Y
F015917Metagenome / Metatranscriptome251Y
F060654Metagenome / Metatranscriptome132N
F061074Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0210383_1000019716F005890GAGGMSFHAVSPAGFSHLSSYLMEQANVSLSMRNCGGQLRPSYGRTCRSNRTAIAVNFRRQCADDNFALERVCRYVSRLLLGHSFGAFPAPRGTRSSASHSAPLRDLGSSQNKFENRGKERRSNFFRAPPRKQTFGTWEPGPLAKLRPV
Ga0210383_100001974F005865GAGGMPAPEPRPEWVLSGANPRLDSATENELAKAARSAWPKALAHVRQVQSRNPFDDDGILVAEVWESVLQSVCRTLDRMNGRRGEIGDLEAYLLGSFYHRLRRALKKEQRREETIHLVSSAQELEVLGKTSHLAQHDIEGTVHAQEILDRMDTWSRKVWIAREYGYTWKDIGRVLGTPADSVMLRFRRRMKILRARLSGGR
Ga0210383_1000019747F015496GGAGGVYNADLVRQLCGEIANEKDREKTEDLLSLLQAVMKDNQEDIRIRMAFLAKKYGLVSDSNAAA
Ga0210383_1000019748F015917AGGAGMEKPKTVRVGNITVTQISPKEREILAQKIKERHDRLRNRYREIHKKVVDWVSYSVEQGSVYICIRFMDKTEFSLQFSPQILTDSIDLADMSTGNFKMIREYYRKADK
Ga0210383_100001975F006676GAGMEDGINPARKKQSQSFRWLQEIDQILVVGMKYGPKGTQEAVKRVRQLTPELVPAQVWHRMRHLREKERSKAATPIDWSESAIEILRDGYRSGGRKKTEAIKTVRALYPGVAGYVVSRFARNQGWLDGVQGSKQKDDRRPWTREEEQELFVRAGYEPVKAIAQKLKRSEQSVRFRLKGRAISARVTDGWSLRRIQQTLHISHRRLQRLIGSGLLRVRDPRVSAISLAEFCRRRGTVALPGIEQKTDTTVCEENEGCSWGRVAKLFGVTAVEVGKWIADGELKVMDTSVTDRAFEAFCLQHSSELNFGLMDPAVAKWLIDEYGLGTVTTPRTSPVASSQKQALVVRPCPKCKRSIRGNGYFGHIPVCRGAMSQGKPGQLGVDQQAS
Ga0210383_1000019750F061074AGGAMASKRKKPIERHPYCRGRKCRSCTWDSLHITVDGPHPRYSKGHLGFYNGDIDAAIDDFLTVLKGESWRLLRDCAEQTPALKQFNLKFA
Ga0210383_1000019751F060654AGGAMRHKGVEYPELKGKTVRRVWFKDDAEFTALFLEFEDDTRARFDLRAAVTFERAPEMCSIAPNGDLTDWNDLRAQRLAPHES
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