NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210383_10000278

Scaffold Ga0210383_10000278


Overview

Basic Information
Taxon OID3300021407 Open in IMG/M
Scaffold IDGa0210383_10000278 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)49884
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)46 (73.02%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000540Metagenome / Metatranscriptome1043Y
F001209Metagenome / Metatranscriptome747Y
F005065Metagenome / Metatranscriptome413Y
F018222Metagenome / Metatranscriptome236Y

Sequences

Protein IDFamilyRBSSequence
Ga0210383_1000027844F000540GGAMAKKKATHPLPKLTETEQDLLSHIQDGYQLETDLLGGNPVLRHLKDNEEIRPLSANRNTIKALEQRGLISPEKGHAPLTIVWHLKKKRD
Ga0210383_1000027847F001209AGGAGMSSRVNSTRTPDILVRNEGTVFLFCPLTQRSKQWIDEHVQDALWFGTVLVVEHRYALGLAVGMKDAGLVLE
Ga0210383_1000027856F005065AGGAGMMDANHISERLGSLRQEISDLRITTARYWSKSQHTALEESAFALGKGRLLQIKREVSDMMKRCA
Ga0210383_1000027857F018222GAGGMVRDPRKTWQYFAQAVIQEDDPEKLTYLMQQLYRVLKDDGVQPTRTF
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