NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210383_10007698

Scaffold Ga0210383_10007698


Overview

Basic Information
Taxon OID3300021407 Open in IMG/M
Scaffold IDGa0210383_10007698 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9328
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (93.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000092Metagenome / Metatranscriptome2385Y
F002289Metagenome / Metatranscriptome574Y
F004291Metagenome / Metatranscriptome445Y
F060240Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0210383_100076983F060240AGGAGMHSNVKNYSLIFCLFVFLFVIIGGGLHLNPGGAFLAAATGTPLMIYAFNRRSIGDCRPEHVPSRLAGNEVRYGSDRSDNSD
Ga0210383_100076986F002289AGGAMFGQLMVEPVVHIGPGIDLQTAVGELLKLAENVEVVRWIELPASVLLFLLVPGDPDSGAVYVLDRQKGTWYAVDFEDEQFVGYSVRQLETLLKDCNFLDLIERPGLWRSGLRWVVMPGMRPEAAV
Ga0210383_100076988F000092GAGVKQHLGRQSGVQTVEVSLLDGKVDVTPKEDGHIDPAQLLKATYDSGVTAAEMDMTARGKIVKDASGSLALQVAPNQSFTFAPNELSKGLESLAGTTTMVTVRGQLYKKSEGKKKPDPSTPLTLLILEVQKKE
Ga0210383_100076989F004291AGGAGGMNRKNFALLILFGMMVGPMAQAQIKHIEMRVEGMT
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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