NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210383_10033496

Scaffold Ga0210383_10033496


Overview

Basic Information
Taxon OID3300021407 Open in IMG/M
Scaffold IDGa0210383_10033496 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4294
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052631Metagenome142Y
F062496Metagenome130Y
F087682Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0210383_100334962F052631AGGAMRTKNSKNKQNMTRIRALSVLARMRSRAESLSQAAHAEHTTPRTVRRIIGKQLKRNSSGHYLATRGDTLRRDLNVFGFDGYEPVVVRSSKQASLAAEHLVAVGRFLRTGDAEWLKPFIGKRVGAIELLTDPDRLRIFADADLVKLDALYRSNPGGGRDK
Ga0210383_100334963F062496AGGAGGMGTTGLIRKPENEGSIDYNPWLTPEVFGKSGKGTVNLLGTMRPGNSQFGEGIILDVKVNGSMYSWTVKYSSGNYSRLHKKFGNSEKEWKGPVKVEVKEYMGKKYIAVV
Ga0210383_100334964F087682N/AMTLSRNPARAARRKEEALEQQGEEQLRCIYCGNTDPLLVRRRRIEGHHMFGCKRDPLEVPCCLNCHAVAGEHLMDADVPMTCEADSSEFARAIFRALAVHFSLLAEACRRFARRMK
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