NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193709_1000144

Scaffold Ga0193709_1000144


Overview

Basic Information
Taxon OID3300021411 Open in IMG/M
Scaffold IDGa0193709_1000144 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29770
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (84.62%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9821Long. (o)-107.0102Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009833Metagenome / Metatranscriptome312Y
F030173Metagenome / Metatranscriptome186Y
F036440Metagenome / Metatranscriptome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0193709_100014413F030173AGGMNARANTSSRPKPDLEPTGSQDGSHPVAYAVVSGIAVGLLLLLVGLLSDTLDTYFNAIGPASLIGGTIVALFVWRRERQTSFVRPHGYEHADPSNLRPKDVWTPEPQHLVPFGPYGAGQWTAHPIGVVIVIGLVLMGLVSRTPVSDLIFFSLLGGAVVGMLLWLYHR
Ga0193709_10001442F036440AGGAGMSSHDSFAASGNSPTRSDGPDFRCENHGSLFLLFPLTRHAHSWIEEHLPKDAQWLGTAVVIEHRYIWTILDGIQASGLAVTRG
Ga0193709_100014436F009833GGAGGMHSPFEILKKEPAGSFRRFEPVSDLAYANMRIKELTMLSEGEYVVFDQRTHNEIAVGRGFWVDAKRE
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