NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193709_1000605

Scaffold Ga0193709_1000605


Overview

Basic Information
Taxon OID3300021411 Open in IMG/M
Scaffold IDGa0193709_1000605 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12023
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9821Long. (o)-107.0102Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016337Metagenome / Metatranscriptome248Y
F044767Metagenome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0193709_100060511F044767GAGMSFFQNRKIFEAPSASQHRPASSGADKADSPAQVSEIPFAATSERGTGIHEVHHALRDFQILLHTRRLYHHTHPKNLQSLEATSDSLQQLVEKMGGLEIRVERDALVVPKLSEAPLPDPKGELRHLAADFQLAGIQTLVVLRQFHVGELDTLTQLIRAALLKSKEPLPNKRTSWWSAKLLEYGVEGILVNAQTDRRVDTVLTSLVAALVAFSGNSANEDVDAPITAPTAENLSDVLRLIARLTPPLESARGLSPEEAARAIHGALAESRPETVHLLLNTISQHSPQDTEKPQPYLVRLSERIILESLSAELTQGTLTPQDFAKNLRVLGKVMVSAGAYNGPHSSQHLS
Ga0193709_10006056F016337GGAGMQNTVTSVLGFLMLFSSVSQQERSRELKGAGHLLGETAERFFSEDVVGQLLLACQAGDWKAVKQLAKAVNPASKPNAKDICSKAALVKQQATSGARQEYGGGDDKAMRTDTFTLDGGRLVRIDMVFKVATTDVEGYHPKYFAELFEGLREAYGEPSKSYTEPVSDAYGVKYDAHRAEWMGKQDVITIIEQPGRNGRTEIVVETLAERNRATKAPKTANPLQ
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Institute for Fundamental Biomedical Research
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