NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193750_1000003

Scaffold Ga0193750_1000003


Overview

Basic Information
Taxon OID3300021413 Open in IMG/M
Scaffold IDGa0193750_1000003 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)210324
Total Scaffold Genes201 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)79 (39.30%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8924Long. (o)-106.9111Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000940Metagenome / Metatranscriptome827Y
F009481Metagenome / Metatranscriptome317Y

Sequences

Protein IDFamilyRBSSequence
Ga0193750_100000357F000940N/AMRSFIESVRRKAPVVYVGSVKEVRLLQRTKFDIKAKAVVDIKAVARTPGSNPQQATIEYSSYDDKTPMLEGGAQYQLRSGVSVIAFANSFDASIPPGYLVQGSRQELLQRVEGLRDILSKMSPEQLKVNEITEDDRRVQISLYEKLSAFLRAAK
Ga0193750_100000381F009481N/AMKKLLTKSFLISTLLIELLGCAGPSPSPEQQARDADQQKEADRQQKEFRKSLPPVSNPGQGW
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