Scaffold Ga0193750_1000365

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0193750_1000365

Scaffold Ga0193750_1000365

Overview

Basic Information
Taxon OID	3300021413 Open in IMG/M
Scaffold ID	Ga0193750_1000365 Open in IMG/M
Source Dataset Name	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	12484
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (69.23%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.8924	Long. (^o)	-106.9111	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F048598	Metagenome	148	Y
F079026	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193750_100036511	F048598	GAG	MKNLIIHRITLIAALALITSAIVSCSSKSKMEGTYSQAGSGMGIVLDLKSGDKATFSMSGEDFPCTYKVTGDKLALDCSPKGEKLDFTIHDDGTLTGPGLVGILKKQK
Ga0193750_100036512	F079026	AGCAGG	MEGAAQDAALAEVKKHWSKGADGWITARNSGTSFAPVRFIREMRDLTVEGVRAADLTEADKMNGLEWAGEVSFKQSPCREAGDQGILLDGLANVTVFRQRGQWTQWVDFQPERVQIQKAKGKWQVHQDTWLLRGSVPGPDDFANAGVK

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