NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193750_1000805

Scaffold Ga0193750_1000805


Overview

Basic Information
Taxon OID3300021413 Open in IMG/M
Scaffold IDGa0193750_1000805 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8595
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (38.46%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8924Long. (o)-106.9111Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002966Metagenome / Metatranscriptome517Y
F018430Metagenome235N

Sequences

Protein IDFamilyRBSSequence
Ga0193750_100080510F002966N/AMTGEESAGVLFIMISPNIITVRRIRKAALLRRRSIRDISRDYFRTEHFRFLVVEAIVFVIMAAMVIWPIVNAVEFIKLYLL
Ga0193750_100080511F018430AGGMGTPPASGSLDQIRNVQRKMRFGGVEAVKPNAAGSAKCSAGRTGSKQLVRPGVITATSSEAVLSSLTSGCDDGRALFFSASAQQALFGQLPCLQAWPIGGLDAGQADAGNRTALTKSAVTMKAASVNRFNIA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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