Scaffold Ga0193750_1004988

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0193750_1004988

Scaffold Ga0193750_1004988

Overview

Basic Information
Taxon OID	3300021413 Open in IMG/M
Scaffold ID	Ga0193750_1004988 Open in IMG/M
Source Dataset Name	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3490
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.8924	Long. (^o)	-106.9111	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002699	Metagenome	536	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193750_10049882	F002699	GGAGG	MKISKFLLSVIVAFATVALIAPQQVEAIIVDGRVSGQTVFTGSGTITESNGISSNGISSNGINELEFNGQLFPHGPLSVTDATGDFIPTVGSQANFNLPIRWTGSGSSVTLLDVLPGVGGPAWDILIAGDGFATGTFFSLKSVTFDEDSLTLIGRGTTQLISGDPLVLKHSAARIVIQGTGQDFTYNNLTVVTTAVIPEGGSGLGLLAIGFVGLVAVEGLRRKIATRQNRYA

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