NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10000084

Scaffold Ga0210394_10000084


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10000084 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)227530
Total Scaffold Genes187 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)154 (82.35%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000408Metagenome / Metatranscriptome1172Y
F051353Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_10000084167F051353AGGMALISHRFQIQPARLRSIFVALMASLVFFLGGCKGALKVDDPQLKPIQAMLDEKLPVGSTEGAVVEFLSARGYPTEPPEKPGTLVAIIRHIDTEKLQPVTARVTFYFDANGKLNTYEIVRTMNAPIPQ
Ga0210394_1000008484F000408GGGGGMSQTIEKLARQRAERRISVRLPLHVWGQDAKGLTFEEDTASENLCRSGAAFRTRFDVAVGSSLKIRIPLQSAASRRDENDFETQGRVVHVSQAQPSGERLVGVQFVGPRFQRMFRPESAA
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