NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10000198

Scaffold Ga0210394_10000198


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10000198 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)145699
Total Scaffold Genes153 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)133 (86.93%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004611Metagenome / Metatranscriptome431Y
F007635Metagenome / Metatranscriptome347Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_1000019810F004611AGGMPHWVAVGRGPRANELAPGRVQAEWLSAGNRPTRNCARLWLQWAVVSDSTSPISSSKSRRWTVIASGLLCGLLALVVIYPKSNAFRSPLAVVVVAAIGLVAVMLQLRLYNRERSRPVRAPLWLNILGIVFALAALFADVLHLSSDMAQLMALGAIGSFSISSAVVLHAFRKRGT
Ga0210394_1000019827F007635AGGAGMSKKTVEFDAHKTVKQEKEISFTKKDGTPVDFEAKVPTKVPVHVKFKADPDKKR
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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