NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10000205

Scaffold Ga0210394_10000205


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10000205 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)142429
Total Scaffold Genes128 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)85 (66.41%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000414Metagenome / Metatranscriptome1169Y
F000687Metagenome / Metatranscriptome937Y
F002363Metagenome / Metatranscriptome567Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_1000020517F000414AGGAGMSAPSRRPEIRRRRARQHKIITLRKRLASAQTDADRNRITAKLHKLAIASPGQPLLK
Ga0210394_100002056F000687GGAGGMEIQESIERTIPSGGNGHVQEVVRQAHEELRQLLQQRAEVMRRIGTIKQTIAGLANLFGDGVLSDELLELVDRKSSGRQPGFTKACRMILMDSNRALSARDVCDRIQERVPPMLTRHKDPMASVTTVLNRLVSYGEARAVSLDNGRRAWQWVADGEAESTKLSISA
Ga0210394_1000020567F002363GGAMSDLAICCAVQFCLAFGLAGLFWPEKLMPLFQVLLFPWSATYRTIRANSLAAIGLSVLLLAHLSTLMS
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