NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10000215

Scaffold Ga0210394_10000215


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10000215 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)136976
Total Scaffold Genes121 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)94 (77.69%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005538Metagenome / Metatranscriptome397Y
F009817Metagenome / Metatranscriptome312Y
F025076Metagenome / Metatranscriptome203Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_1000021584F005538GGAGGMDFQVHEQTYFLSLAEDEKQWLVFVATPTGARPIPVYVDAPEQRSSVLVREEKQRIPN
Ga0210394_1000021595F009817AGGMNWIRTIQPKAAIVLVVLGLCHVAVCQQVSAALLHPSMIGASSFEPAPVVQATPSTLPEAPVQHRFLDRENSLLFATSAAFSAADFVVTRDNLRSGGRELNPITSWFTGSTAGLAVNFAGETAGVVGLSYLFHKTGHHKMERAVSMLNIGASAGAVAFDLAHR
Ga0210394_1000021597F025076AGGAGGMDRSARLHLVARITYYVGWLTLLCGGLVHLNIARSLFMAMSLTKRNLFEVSVTCFVICVASEIRVLASTGKGSAAS
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