NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10000326

Scaffold Ga0210394_10000326


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10000326 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)109160
Total Scaffold Genes97 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)74 (76.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018819Metagenome / Metatranscriptome233Y
F028918Metagenome / Metatranscriptome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_1000032624F018819AGGTGGMNDFSPLLIKDWYALGSLMAQIGFLVAAVWFARNFLRTMRAFQEQIGALLKLLITAAPGERQSTSSNARSVAEASPYWLSPAPTAPGSTPEVAERGPNLFVAGWQRTLHWLREPMGGSRVSYRRRVMDWLQAPAGH
Ga0210394_1000032649F028918GAGGMLCRPQIRCFSAWFLALATAFLPAAAQPKHDKNVTNLEGGVFLGTDGAIPGGACFRVVGRVTAADFFENLKREDTNSGSLYRRGNELVTKLPKRLHLSVSITDTPCDLHMQQTNSRVYLTDEMIHSLRLHFFWKRGLELRPIHDVVKSGGEVRPVPWYSHGLEQELPKRFEWLVEFDLPSEGVPLTDNLVLMIYTPEHRLIARGAAKM
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