NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10000407

Scaffold Ga0210394_10000407


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10000407 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)93672
Total Scaffold Genes79 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)52 (65.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001077Metagenome / Metatranscriptome785Y
F016865Metagenome / Metatranscriptome244Y
F064049Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_1000040721F016865AGGAGGMSTKGLFLGLILVGMTASAASAQDATSKPKAEVRSITGCLSKGDSADEFLLTAKDGSTWETHSNTAVNLSEHVGHTVTLKGVVANAKAHNMKEDAKTAAADAGVKKTDTEHGHLKVTSLKMVSESCSK
Ga0210394_1000040754F064049N/AMQNRCVTTDSGEGSEKERLDFLATRLRELNNTASQVLIFLSFAIVAGVTFLTLNPGSATKSAIHGALRWWIGAIFPTVIGILPLKEIRDRDVRWYRALLWLRFVLMWSAIACIFFGAIWFFKAV
Ga0210394_1000040765F001077AGGMILIYQLTWKILPGLRGLSCSDFRATPTAVPNTEQGVAIDCASERDCNALLQELESHFAPQRFTNNASAFETVKTYVLETMARKL
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