NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10000514

Scaffold Ga0210394_10000514


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10000514 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)79921
Total Scaffold Genes71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)52 (73.24%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002012Metagenome / Metatranscriptome604Y
F003124Metagenome / Metatranscriptome506Y
F003629Metagenome / Metatranscriptome476Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_1000051414F003124AGGVTLPPKIAKQVETMAKERDLSDNRVLVELIEQGIEARQQKEKAFFQLAERFRAASDPEQIKQLGNELGRFIFDK
Ga0210394_1000051443F002012N/AMSFSSTSVLIAGFTGTTCTALHNLRNARSTLVASLVLLERLSSHHTDVYNILWAVVFGFATLNILGLAARRSEPNRRGLSFGELMAVMVVLLSIFLLGAELLNFVHIFPIKIQR
Ga0210394_1000051459F003629AGGMKLDPLLNRRVIFKLHGMDPLDSTIIKKDEAGYWIRGGALASQLDQSNCSVRDNDVRYLEFTRIEWLRATRQRPASS
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