NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0210394_10000781

Scaffold Ga0210394_10000781


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10000781 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)59276
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)49 (76.56%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Associated Families9

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000188Metagenome / Metatranscriptome1692Y
F000512Metagenome / Metatranscriptome1064Y
F000739Metagenome / Metatranscriptome913Y
F000781Metagenome / Metatranscriptome895Y
F000885Metagenome / Metatranscriptome849Y
F007488Metagenome / Metatranscriptome350Y
F009917Metagenome311Y
F015120Metagenome / Metatranscriptome257Y
F106044Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0210394_1000078110F009917AGGAMGTSGWTYVVVVFSLGAQSVVFLRWMHRRMRDDEIQRVFVRDLALRHLPNIYRALNTIAEKQGIHLEDQPMVNYVDMRNGGRNR
Ga0210394_1000078112F007488N/AMRIRAYEESDLEALRAIHARQGFGYAFPDLGDPLFLTKLVLGREEGGKGIAGAALLRLTAEAYLLLDPEAGSPREKWQWLLGLHEATRRDALARGLEDVHAWLPPAIAQKFGKRLTRLGWVRDDEWTPYCKKLS
Ga0210394_1000078113F106044AGGAGMPNLTSNAIWDFNPGDTVTLNAAFTFDLQDPNDNQTVSGVLTTLQGRTPHVTLTQTDNATISVVVTI
Ga0210394_1000078114F000781AGGAMLTVAQLAPLKDRDPYLYETLVKIVSAVNATSANAGVDPANPSPAPPAIAALKVQAANGWFDLAITDPAVTRPGLFYFAESDVTPAFSAPRVYFLGASRNLYVQLGNQTLYWRAYSQYVGSLASAPVSFGSPATAVAGGGTSGPAPLPSSGSGALPNGLLRGGNGFGVVPGARVVKQTVL
Ga0210394_1000078121F000739AGGMLANRVEVWLKGLLAAGVSGAAGGVMTGLASVGIDPGHFNLSAGMGATVRIGAAAALINAVIGVAAYLQKSPLPEQ
Ga0210394_1000078122F000512N/AMIQVIRETHETPESVARRLCLAGGMNRYGEANYRVVWGWNRLGWIGGKFEDRDERGDLIREVVELRWEPKYPQVNRWHVERWVAPEAYGSPRAWYAQTVERADGKSVAALGPYPERGEYEHCFTLQGPRGEFVQLTSTIAEHVARAIEWARGRDRAMQRAKLYEREAREERAYEEWAFAVMDHGTPAFHGAPMVAG
Ga0210394_1000078127F015120GAGGMFEILKKAFTTRYVGMLEGEVARLRMENRALMNSLLGTAGFPPVEFAEAVKPVELPRMRRRSWQQIQKLRESEATKA
Ga0210394_1000078129F000885AGGAGGMTNAKVVFIGEISQIAGVASVVGGVVLSLRHWPAAMALVGGLAAYFVGKKLRGQ
Ga0210394_1000078134F000188GGAGGMSVKPEMAFDVCWEVYRGAREVMESKRGIAALNVEMETKYEWRPDVRPKMKDWVADFALAGQAALEGPEWASRMVLFRLYYLGLAPYERARHFLGLSERGWVNWSEEIRRRCGAEILRRGMFPPRKYFSGRD
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.