NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10000806

Scaffold Ga0210394_10000806


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10000806 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)57794
Total Scaffold Genes68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)52 (76.47%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000281Metagenome / Metatranscriptome1382Y
F001535Metagenome / Metatranscriptome675Y
F050565Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_100008066F000281N/AMQNPVKDRIVKLREEIAQISEANRQYIGGGKKIPGSAGDHERRLQRLQEILDELVALTDWKKL
Ga0210394_1000080663F050565N/AMAGFRPPQRPIRRFPPAFVIYEFPFLFGGPFWGLNSCSWATCDLFWSWTLGYTDVSSPGPTNYVSQVYETPGYDYGEERPDRPQLFLKDGTALNVTDYWLVDDQLHFTMIEEFGTKPAEHVIPFEALDLQTTVDANARRGFSFVLRDEPIEQYLRDHPEGSLPAVTHPHQ
Ga0210394_1000080664F001535GGAGMDTQSEHNPESNPAKVEAHIKSAQQILKTLQEKIGEHPEIGAALTKLEMALNDLAIQTGGLL
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